The Penalty For Paying Your Tax Late Has Doubled Under MTD
Being a little late with your tax now costs far more than it did a couple of years ago, and this is a charge for lateness itself, separate from the tax you owe and from late-payment interest. Under the harmonised late-payment penalty regime now in force for VAT, and phasing in for Income Tax Self Assessment as Making Tax Digital rolls out, a first penalty of 3% of the tax still unpaid at day 15 is followed by a further 3% of whatever is still unpaid at day 30, so 6% by day 31. From day 31 a second penalty then accrues daily at an annualised 10% a year until the bill is cleared.
Here is the catch. These are penalties, not interest, and they have been quietly raised. The old regime charged 2% and then a further 2%, up to 4%, with a second penalty running at 4% a year, so the day-31 ceiling has gone from 4% to 6% and the second penalty rate from 4% to 10% a year, more than doubling. The government confirmed at the Autumn Budget 2025 a further increase from the 2027 to 2028 tax year: the first penalty rises from 3% to 4% at both day 15 and day 30, lifting the day-31 ceiling from 6% to 8%, while the second penalty stays at 10% a year. The same 3% to 4% first-penalty rise applies to VAT from April 2027. In other words, the increase falls on the fixed first penalty for being late, not across the board.
It lands at an awkward moment. The second Self Assessment payment on account is due on 31 July 2026, and MTD for Income Tax, mandatory from 6 April 2026 for those with combined self-employment and property income over £50,000, is pulling hundreds of thousands more sole traders and landlords into this regime. The people most exposed are not deliberate defaulters but the self-employed, small firms and landlords who hit a cashflow gap and pay a few weeks late.
- Is sharpening the penalty for lateness, on top of the tax and the interest, a sensible way to improve compliance, or does it punish cashflow problems more than wrongdoing?
- With MTD sweeping far more sole traders and landlords in, who is hit hardest by a 6% charge by day 31, rising to 8% from 2027, and a 10%-a-year penalty on top, and is that proportionate for a genuine cashflow slip?
- What should people do now to stay clear of these penalties, especially before 31 July? Do you have a client whose plans this would change? If so, please give as much colour and detail as possible.





